Nitrate signaling and regulation by the environment

Group leader: Antoine Martin
Senior Scientist CNRS

 

 

Key words

nitrogen nutrition, transport and sensing of nitrate, N and C signaling, root development, climate change

Presentation

Our team is interested in the molecular mechanisms and signaling pathways involved in regulating root nitrate transport and root development in response to environmental factors. Our research projects focus on two main lines:

  • The identification and characterization of transcriptional and post-transcriptional mechanisms targeting root nitrate transporters and their regulators. This project integrates approaches ranging from the study of genome expression variability to post-translational modifications of nitrate transporters, via the study of associated signaling pathways, particularly those dependent on redox mechanisms.
  • The study of regulatory and signaling networks controlling root nitrate transport and root development in response to photosynthesis and elevated atmospheric CO2. The aim is to understand the molecular, developmental and signaling mechanisms at the basis of C/N interactions, particularly in the context of climate change.

We use integrative approaches including functional genomics, molecular physiology and cell biology. The model plant Arabidopsis thaliana is our main model, complemented by approaches on crops such as wheat or tomato.

These questions are at the heart of a global approach to developing sustainable, environmentally-friendly agriculture, which must be applied in the context of adaptation to climate change.

Team members
Main results
Significant publications

Bach L, Gojon A (2023) Root system growth and development responses to elevated CO2: underlying signalling mechanisms and role in improving plant CO2 capture and soil C storage. Biochem. J., 480(11):753-771

Cassan O, Pimparé L-L, Dubos C, Gojon A, Bach L, Lèbre S, Martin A (2023) A gene regulatory network in Arabidopsis roots reveals features and regulators of the plant response to elevated CO2. New Phytol., (accepted)

Chaput V, Li J, Séré D, Tillard P, Fizames C, Moyano TC, Zuo K, Martin A, Gutiérrez RA, Gojon A, Lejay L (2023) Characterisation of the signalling pathways involved in the repression of root nitrate uptake by nitrate in Arabidopsis thaliana. J. Exp. Bot., (accepted)

Hirt H, Al-Babili S, Almeida-Trapp M, Martin A, Aranda M, Bartels D, Bennett MJ, Blilou I, Boer D, Boulouis A, Bowler C, Brunel-Muguet S, Chardon F, Colcombet J, Colot V, Daszkowska-Golec A, Dinneny JR, Field B, Froehlich K, Gardener CH, Gojon A, Gomès E, Gómez Álvarez EM, Gutierrez C, Havaux M, Hayes S, Heard E, Hodges M, Alghamdi AK, Laplaze L, Lauersen KJ, Leonhardt N, Johnson X, Jones JDG, Kollist H, Kopriva S, Krapp A, Lopez-Portillo Masson M, McCabe MF, Merendino L, Molina A, Moreno Ramirez JL, Müller-Röber B, Nicolas M, Nir I, Olivas Orduna I, Pardo-Tomás J, Reichheld J-P, Rodriguez Egea PL, Rouached H, Saad MM, Schlögelhofer P, Singh KA, De Smet I, Stanschewski C, Stra A, Tester M, Walshe C, Weber APM, Weigel D, Wigge PA, Wrzaczek M, Wulff B, Young IM (2023) PlantACT! – how to tackle the climate crisis. Trends Plant Sci., 28(5):537-543

Bäurle I, Laplaze L, Martin A (2023) Preparing for an uncertain future: molecular responses of plants facing climate change. J. Exp. Bot., 74(5):1297-1302

Gojon A, Cassan O, Bach L, Lejay L, Martin A (2023) The decline of plant mineral nutrition under rising CO2: physiological and molecular aspects of a bad deal. Trends Plant Sci., 28(2):185-198

Séré D, Cassan O, Bellegarde F, Fizames C, Boucherez J, Schivre G, Azevedo J, Lagrange T, Gojon A, Martin A (2022) Loss of Polycomb proteins CLF and LHP1 leads to excessive RNA degradation in Arabidopsis. J. Exp. Bot., 73(16):5400-5413

Charoensawan V, Cortijo S, Domijan M, Negrão S (2022) Multi-disciplinary approaches to plant responses to climate change. Front. Plant Sci., 13:876432

Ruffel S*, Chaput V*, Przybyla-Toscano J, Fayos I, Ibarra C, Moyano TC, Fizames C, Tillard P, O’Brien JA, Gutiérrez RA, Gojon A, Lejay L✉ (2021) Genome-wide analysis in response to nitrogen and carbon identifies regulators for root AtNRT2 transporters. Plant Physiol., 186(1):696-714

Cassan O✉, Lèbre S, Martin A (2021) Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite. BMC Genomics, 22:387

Chu L-C, Offenborn JN, Steinhorst L, Wu XN, Xi L, Li Z, Jacquot A, Lejay L, Kudla J, Schulze W✉ (2021) Plasma membrane calcineurin B-like calcium-ion sensor proteins function in regulating primary root growth and nitrate uptake by affecting global phosphorylation patterns and microdomain protein distribution. New Phytol., 229(4):2223-2237

Cortijo S, Bhattarai M, Locke JCW✉, Ahnert SE✉ (2020) Co-expression networks from gene expression variability between genetically identical seedlings can reveal novel regulatory relationships. Front. Plant Sci., 11:599464

Jacquot A, Chaput V, Mauriès A, Li Z, Tillard P, Fizames C, Bonillo P, Bellegarde F, Laugier E, Santoni V, Hem S, Martin A, Gojon A, Schulze W, Lejay L✉ (2020) NRT2.1 C-terminus phosphorylation prevents root high affinity nitrate uptake activity in Arabidopsis thaliana. New Phytol., 228(3):1038-1054

Maghiaoui A, Gojon A, Bach L✉ (2020) NRT1.1-centered nitrate signaling in plants. J. Exp. Bot., 71(20):6226-6237

Vidal EA, Alvarez JM, Araus V, Riveras E, Brooks MD, Krouk G, Ruffel S, Lejay L, Crawford NM, Coruzzi GM, Gutiérrez RA✉ (2020) Nitrate 2020: Thirty years from transport to signaling networks. Plant Cell, 32(7):2094-2119

Maghiaoui A*, Bouguyon E*, Cuesta C, Perrine-Walker F, Alcon C, Krouk G, Benková E, Nacry P, Gojon A, Bach L✉ (2020) The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate. J. Exp. Bot., 71(15):4480-4494

Chaput V, Martin A, Lejay L✉ (2020) Redox metabolism: the hidden player in carbon and nitrogen signaling? J. Exp. Bot., 71(13):3816-3826

Bellegarde F, Maghiaoui A, Boucherez J, Krouk G, Lejay L, Bach L, Gojon A, Martin A✉ (2019) The chromatin factor HNI9 and ELONGATED HYPOCOTYL 5 maintain ROS homeostasis under high nitrogen provision. Plant Physiol., 180(1):582-592

Bellegarde F, Herbert L, Séré D, Caillieux E, Boucherez J, Fizames C, Roudier F, Gojon A, Martin A✉ (2018) Polycomb Repressive Complex 2 attenuates the very high expression of the Arabidopsis gene NRT2.1. Sci. Rep.-UK, 8:7905

Bellegarde F, Gojon A, Martin A✉ (2017) Signals and players in the transcriptional regulation of root responses by local and systemic N signaling in Arabidopsis thaliana. J. Exp. Bot., 68(10):2553-2565

Jacquot A, Li Z, Gojon A, Schulze W, Lejay L✉ (2017) Post-translational regulation of nitrogen transporters in plants and microorganisms. J. Exp. Bot., 68(10):2567-2580

 

Collaborations
  • Nationales
    • Nourollah Ahmadi / Emmanuel Guiderdoni, UMR AGAP, Cirad, Montpellier
    • Anne Krapp / Christian Meyer, IJPB, INRA, Versailles
    • François Roudier, UMR RDP, ENS, Lyon
    • Christophe Salon, UMR Agro-écologie, INRA, Dijon
  • Internationales
    • Rodrigo Gutiérrez, Université catholique du Chili
    • Waltraud Schulze, Université Hohenheim, Allemagne
    • Dennis Shasha, New York University, Etats Unis
    • Yi-Fang Tsay, Academia Sinica, Taiwan
    • Eva Zazimalova, Czech Academy of Sciences, République Tchèque
Funding
  • Projet ANR Franco-Taiwanais NITRASENSE (2017-2020)
  • Projet Agropolis Fondation GENERICE (2017-2019)
  • Projet INRA BAP CLIMNUTR (2017-2018)
  • Projet ANR IMANA (2014-2018)
  • Projet ANR blanc Franco-Allemand SIPHON (2014-2017)
  • Projet INRA BAP ACCESS (2014-2015)
  • Projet ANR blanc Franco-Chilien ModelN (2010-2013)
  • Projet Agropolis Fondation RHIZOPOLIS (2010-2013)
Former team members

IBIP seminar: Pierre Larmande

June 12, 2025 – Multi-omic data integration and knowledge extraction in plant science

HDR defended by 
Liên BACH

January 16, 2025 – Transmission et la réponse des plantes à des signaux de l’environnement internes (développementaux) ou externes (environnementaux)

IBIP seminar: Matthieu Platre

January 23, 2025 – Decoding the Limits of the Root System Plasticity under Climate Change Conditions

IBIP seminar: Martin Groth

Thursday, february 13, 2025 – Folate metabolism links DNA methylation to photorespiration

VAST – CNRS School of Science: Plant Genome Advances for a Sustainable Agriculture in the Face of Climate Change

October 21-25, 2024 – Hanoi, Vietnam
organizers: Antoine Martin (Sirene team) & Doan Trung Luu (TICER team )

Mistral Summer school on “Ion and water transport in plants”

July 1-12, 2024 – Montpellier
Organisers: Anne-Aliénor Véry, Martin Boeglin, Claire Corratgé-Faillie, Perrine Rudinger & Chantal Baracco

IBIP seminar: Yoan Coudert

Thursday, November 16 2023 – Evolution of plant architecture through changes in auxin movement control