Hormones, nutrients and development

Group leader: Benoît Lacombe
CNRS Research Director

 

 

Key words

nutrients-hormones interaction, nutrients sensing, long-distance signaling, systems biology, machine   learning

Presentation

The mineral nutrition of most terrestrial organisms (bacteria, fungi, plants) relies on the uptake of inorganic ions from the soil. However, the availability of these ions dramatically fluctuates in both time and space. To face this constraint, all organisms are able to develop a wide range of adaptive responses triggered by sensing systems that perceive the external nutrient availability. The identification of these sensing systems has a strategic importance at both fundamental and applied levels to unravel and manipulate the molecular mechanisms involved in tolerance to nutrient stress. Flexible modulation of the postembryonic organogenesis in response to nutrient availability is one of the most prominent adaptation strategies, and a major determinant of the plant body architecture. This plant ability to respond to environmental conditions is mediated through signalling molecules called plant hormones. Thus, the current insights into hormone and nutrition interplay indicate existence of complex network in which hormones act as endogenous mediators in response to nutrient fluctuation and at the same time fine tune plant capacity for nutrient acquisition. The current data support the concept of nutrient – hormonal regulatory network control plant behavior in response to fluctuating nitrogen environments and feedback on the nutrition acquisition capacity. Together with the influence of nitrogen on hormonal status of the plant this builds the conceptual cycle where nutrients control growth, which in turn control nutrient use and perception. However, molecular mechanisms underlying this nutrient – hormones regulated plant development are still scarcely understood. We develop complementary approaches to understand the molecular basis of development regulated by the hormone-nutrient interactions (nitrate and urea). We focus on interactions during root development with different approaches taking advantage of our skills in biophysics, molecular and cellular biology, physiology and systems biology. The project uses an approach at the interface between biology and modeling to reveal the molecular mechanisms involved in the interaction between nutritional and hormonal signals in plants. Our goal is to identify the mechanisms through which plants perceive their mineral environment and modify their development to adapt to nutritional constraints by using complementary approaches: targeted approaches on different nitrate, auxin, ABA and cytokinins transporters, and approaches without preconceptions using systems biology.

Team members
Main results
Significant publications

Armstrong EM, Larson ER, Helen H, Webb CR, Dohleman F, Araya Y, Meade C, Feng X, Mukoye B, Levin MJ, Lacombe B, Bakirbas A, Cardoso AA, Fleury D, Gessler A, Jaiswal D, Onkokesung N, Pathare VS, Phartyal SS, Sevanto S, Wilson I, Grierson CS (2023) One hundred important questions facing plant science: an international perspective. New Phytol., 238(2):470-481

Abualia R, Ötvös K, Novák O, Bouguyon E, Domanegg K, Krapp A, Nacry P, Gojon A, Lacombe B, Benková E (2022) Molecular framework integrating nitrate sensing in root and auxin-guided shoot adaptive responses. P. Natl. Acad. Sci. USA, 119(31):e2122460119

Therby-Vale R, Lacombe B, Rhee SY, Nussaume L, Rouached H (2022) Mineral nutrient signaling controls photosynthesis: focus on iron deficiency-induced chlorosis. Trends Plant Sci., (in press)

Safi A✉, Medici A, Szponarski W, Martin F, Clément-Vidal A, Marshall-Colón A, Ruffel S, Gaymard F, Rouached H, Leclercq J, Coruzzi GM, Lacombe B, Krouk G✉ (2021) GARP transcription factors repress Arabidopsis nitrogen starvation response via ROS-dependent and -independent pathways . J. Exp. Bot., 72(10):3881-3901

Fichtner F, Dissanayake IM, Lacombe B, Barbier F✉ (2021) Sugar and nitrate sensing: A multi-billion-year story. Trends Plant Sci., 26(4):352-374

Léran S*, Noguéro M*, Corratgé-Faillie C, Boursiac Y, Brachet C, Lacombe B✉ (2020) Functional characterization of the Arabidopsis abscisic acid transporters NPF4.5 and NPF4.6 in Xenopus oocytes. Front. Plant Sci., 11:144

Bouain N, Krouk G, Lacombe B, Rouached H✉ (2019) Getting to the root of plant mineral nutrition: combinatorial nutrient stresses reveal emergent properties. Trends Plant Sci., 24(6):542-552

Medici A*✉, Szponarski W*, Dangeville P, Safi A, Dissanayake IM, Saenchai C, Emanuel A, Rubio V, Lacombe B, Ruffel S, Tanurdzic M, Rouached H, Krouk G✉ (2019) Identification of molecular integrators shows that nitrogen actively controls the phosphate starvation response in plants. Plant Cell, 31(5):1171-1184


Poitout A
, Crabos A, Petřík I, Novák O, Krouk G, Lacombe B, Ruffel S✉ (2018) Responses to systemic nitrogen signaling in Arabidopsis roots involve trans-zeatin in shoots. Plant Cell, 30(6):1243-1257

Noguéro M*, Léran S*, Bouguyon E, Brachet C, Tillard P, Nacry P, Gojon A, Krouk G, Lacombe B✉ (2018) Revisiting the functional properties of NPF6.3/NRT1.1/CHL1 in xenopus oocytes. bioRxiv,

Safi A
, Medici A, Szponarski W, Marshall-Colón A, Ruffel S, Gaymard F, Coruzzi GM, Lacombe B, Krouk G✉ (2018) HRS1/HHOs GARP transcription factors and reactive oxygen species are regulators of Arabidopsis nitrogen starvation response. bioRxiv,

Former team members

HDR François Barbier

April 10, 2025 – Role of nutrient signalling in the control of shoot architecture

VAST – CNRS School of Science: Plant Genome Advances for a Sustainable Agriculture in the Face of Climate Change

October 21-25, 2024 – Hanoi, Vietnam
organizers: Antoine Martin (Sirene team) & Doan Trung Luu (TICER team )

Mistral Summer school on “Ion and water transport in plants”

July 1-12, 2024 – Montpellier
Organisers: Anne-Aliénor Véry, Martin Boeglin, Claire Corratgé-Faillie, Perrine Rudinger & Chantal Baracco

IBIP seminar: François Barbier

March 14, 2024 – Nutrient and metabolite signalling control shoot branching

Benoit Lacombe (HoNuDe team) is in the list of most cited researchers in 2023

Clarivate released its list of Highly Cited Researchers (HCR) on November 2023

IPSiM and Michigan State University join forces to create an International Associate Laboratory (LIA)

Coordinated by the Plant Biology and Breeding (BAP) Department at INRAE, the IN-COMBI LIA also brings Montpellier’s Institut Agro and the University of Montpellier on board. The impetus for the project came from Benoît Lacombe and Sandrine Ruffel (INRAE’s IPSiM Unit) and from Hatem Rouached at MSU, who share a long history of collaboration.

IBIP seminar: Prof. Mark G.M. Aarts

May 4, 2022 – Arabidopsis and other models to study how to improve plant production

Artificial intelligence at the service of biological research

The start-up Bionomeex, created by a team from B&PMP and the Alexander Grothendieck Institute in Montpellier, develops artificial intelligence tools for researchers in biology, medicine and the environment. Its first products concern super-resolution microscopy and genetic analysis.

Nitrogen Systemic Signaling: From Symbiotic Nodulation to Root Acquisition

Team: Hormones, Nutriments et Développement (HoNuDe)