| Ibd3 | ||||||||||||||||||||||||||||
| MAPI | MAPI subsampled | Geneland geographical plots from uncorrelated frequency model. | Geneland geographical plots from correlated frequency model. | DAPC plots when K* is determined based on Ward's minimum variance method | DAPC plots when K* is determined based on a ΔBIC ≥ 6 as an evidence against the model with the higher BIC value | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Simulated data | Geographical plots of weighted mean of all ellipse values (i.e., individual genetic distances ar of Rousset 2000) and significant barrier (cells with differentiation values higher than expected under a random distribution (no FDR applied) are materialized with thick black borders) | Idem, Benjamini-Yekutieli FDR applied | MAPI analysis (no FDR applied) with subsampled (75/200) dataset | MAPI analysis (Benjamini-Yekutieli FDR applied) with subsampled (75/200) dataset | Best probability memberships | Probability memberships for cluster 1 | Probability memberships for cluster 2 | Probability memberships for cluster 3 | Probability memberships for cluster 4 | Probability memberships for cluster 5 | Best probability memberships | Probability memberships for cluster 1 | Probability memberships for cluster 2 | Probability memberships for cluster 3 | Probability memberships for cluster 4 | Probability memberships for cluster 5 | Scatter plot showing the first two components of the DAPC (when K*>2) or density plot showing the first principal component of the DAPC (when K*=2) | Probability memberships for cluster 1 | Probability memberships for cluster 2 | Probability memberships for cluster 3 | Probability memberships for cluster 4 | Probability memberships for cluster 5 | Scatter plot showing the first two components of the DAPC (when K*>2) or density plot showing the first principal component of the DAPC (when K*=2) | Probability memberships for cluster 1 | Probability memberships for cluster 2 | Probability memberships for cluster 3 | Probability memberships for cluster 4 | Probability memberships for cluster 5 |
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 |
| Ibd3_1 (full) |
unexpected=4.3% |
unexpected=0.1% |
unexpected=4.4% |
unexpected=0.1% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_2 (full) |
unexpected=8.5% |
unexpected=0.0% |
unexpected=5.1% |
unexpected=0.0% |
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NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_3 (full) |
unexpected=7.0% |
unexpected=0.0% |
unexpected=6.7% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_4 (full) |
unexpected=3.2% |
unexpected=0.1% |
unexpected=5.5% |
unexpected=0.1% |
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NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_5 (full) |
unexpected=3.0% |
unexpected=0.0% |
unexpected=6.4% |
unexpected=0.0% |
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NA | NA | NA | ![]() |
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NA | NA | NA |
| Ibd3_6 (full) |
unexpected=3.5% |
unexpected=0.0% |
unexpected=1.2% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_7 (full) |
unexpected=5.3% |
unexpected=0.0% |
unexpected=9.4% |
unexpected=2.2% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_8 (full) |
unexpected=7.0% |
unexpected=0.6% |
unexpected=4.1% |
unexpected=0.1% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_9 (full) |
unexpected=2.6% |
unexpected=0.2% |
unexpected=3.9% |
unexpected=0.0% |
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NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_10 (full) |
unexpected=2.9% |
unexpected=0.0% |
unexpected=1.7% |
unexpected=0.0% |
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NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_11 (full) |
unexpected=4.1% |
unexpected=0.0% |
unexpected=4.9% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_12 (full) |
unexpected=2.6% |
unexpected=0.0% |
unexpected=1.5% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_13 (full) |
unexpected=0.5% |
unexpected=0.0% |
unexpected=0.6% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_14 (full) |
unexpected=1.9% |
unexpected=0.0% |
unexpected=1.5% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_15 (full) |
unexpected=3.4% |
unexpected=0.0% |
unexpected=2.9% |
unexpected=0.0% |
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NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_16 (full) |
unexpected=2.8% |
unexpected=0.0% |
unexpected=1.1% |
unexpected=0.1% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_17 (full) |
unexpected=3.6% |
unexpected=0.1% |
unexpected=11.6% |
unexpected=0.7% |
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NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_18 (full) |
unexpected=4.6% |
unexpected=0.0% |
unexpected=3.8% |
unexpected=0.1% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_19 (full) |
unexpected=5.7% |
unexpected=0.0% |
unexpected=4.0% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_20 (full) |
unexpected=2.7% |
unexpected=0.0% |
unexpected=10.0% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_21 (full) |
unexpected=4.8% |
unexpected=0.2% |
unexpected=8.6% |
unexpected=0.1% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_22 (full) |
unexpected=1.8% |
unexpected=0.0% |
unexpected=2.8% |
unexpected=0.0% |
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NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_23 (full) |
unexpected=4.7% |
unexpected=0.1% |
unexpected=15.3% |
unexpected=1.9% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_24 (full) |
unexpected=0.8% |
unexpected=0.0% |
unexpected=1.8% |
unexpected=0.0% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |
| Ibd3_25 (full) |
unexpected=4.2% |
unexpected=0.0% |
unexpected=11.6% |
unexpected=0.2% |
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NA | NA | NA | ONE CLUSTER | NA | NA | NA | NA | NA |