KimTree
Inferring population histories using genome-wide allele frequency data
Overview

The software package KimTree is aimed at estimating divergence times on a diffusion time scale from large single nucleotide polymorphism (SNP) allele count data. Since version 1.2, KimTree can accommodate read count data originating from PoolSeq experiments. The manual provides information about how to format the data file, how to specify the user-defined parameters, and how to interpret the results.

Citation
Gautier M and Vitalis R (2013) Inferring population histories using genome-wide allele frequency data. Molecular Biology and Evolution 30: 654-668